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<title>Standard PDB residues in Marvin</title>
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<h1>Standard PDB residues in Marvin</h1>
<p>

The following table contains the standard residues and their sequence number

.

<table CELLSPACING=0 CELLPADDING=5 border="0">
<tr><td VALIGN=TOP>

<table CELLSPACING=0 CELLPADDING=5 border="0">
<tr><td ALIGN=RIGHT>0</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff00ff"><code>UNK</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#990099"><code>UNK</code></font></td>
    <td>Unknown</td></tr>
<tr><th COLSPAN=4>Nucleic Acids</th></tr>
<tr><td ALIGN=RIGHT>1</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#9999ff"><code>A</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#333399"><code>A</code></font></td>
    <td>Adenosine</td></tr>
<tr><td ALIGN=RIGHT>2</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#9999ff"><code>+A</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#333399"><code>+A</code></font></td>
    <td>Modified adenosine</td></tr>
<tr><td ALIGN=RIGHT>3</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff9933"><code>C</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#996600"><code>C</code></font></td>
    <td>Cytidine</td></tr>
<tr><td ALIGN=RIGHT>4</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff9933"><code>+C</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#996600"><code>+C</code></font></td>
    <td>Modified cytidine</td></tr>
<tr><td ALIGN=RIGHT>5</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff6666"><code>G</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#993333"><code>G</code></font></td>
    <td>Guanosine</td></tr>
<tr><td ALIGN=RIGHT>6</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff6666"><code>+G</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#993333"><code>+G</code></font></td>
    <td>Modified guanosine</td></tr>
<tr><td ALIGN=RIGHT>7</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#33ff33"><code>T</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#33ff33"><code>T</code></font></td>
    <td>Thymidine</td></tr>
<tr><td ALIGN=RIGHT>8</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#33ff33"><code>+T</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#33ff33"><code>+T</code></font></td>
    <td>Modified thymidine</td></tr>
<tr><td ALIGN=RIGHT>9</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff00ff"><code>I</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#990099"><code>I</code></font></td>
    <td>Inosine</td></tr>
<tr><td ALIGN=RIGHT>10</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff00ff"><code>+I</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#990099"><code>+I</code></font></td>
    <td>Modified inosine</td></tr>
<tr><td ALIGN=RIGHT>11</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff00ff"><code>U</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#990099"><code>U</code></font></td>
    <td>Uridine</td></tr>
<tr><td ALIGN=RIGHT>12</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff00ff"><code>+U</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#990099"><code>+U</code></font></td>
    <td>Modified uridine</td></tr>
<tr><th COLSPAN=4>Amino Acids</th></tr>
<tr><td ALIGN=RIGHT>13</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#99ff99"><code>ALA</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#66cc66"><code>ALA</code></font></td>
    <td>Alanine</td></tr>
<tr><td ALIGN=RIGHT>14</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#0000ff"><code>ARG</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#0000ff"><code>ARG</code></font></td>
    <td>Arginine</td></tr>
<tr><td ALIGN=RIGHT>15</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff6666"><code>ASN</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#993333"><code>ASN</code></font></td>
    <td>Asparagin</td></tr>
<tr><td ALIGN=RIGHT>16</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#990033"><code>ASP</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#990033"><code>ASP</code></font></td>
    <td>Aspartic acid</td></tr>
</table>

</td><td VALIGN=TOP>

<table CELLSPACING=0 CELLPADDING=5 border="0">
<tr><td ALIGN=RIGHT>17</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ffff66"><code>CYS</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#666633"><code>CYS</code></font></td>
    <td>Cysteine</td></tr>
<tr><td ALIGN=RIGHT>18</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff3333"><code>GLN</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#cc3333"><code>GLN</code></font></td>
    <td>Glutamine</td></tr>
<tr><td ALIGN=RIGHT>19</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#660000"><code>GLU</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#660000"><code>GLU</code></font></td>
    <td>Glutamic acid</td></tr>
<tr><td ALIGN=RIGHT>20</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ffffff"><code>GLY</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#000000"><code>GLY</code></font></td>
    <td>Glycine</td></tr>
<tr><td ALIGN=RIGHT>21</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#6666ff"><code>HIS</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#6666cc"><code>HIS</code></font></td>
    <td>Histidine</td></tr>
<tr><td ALIGN=RIGHT>22</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#006600"><code>ILE</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#006600"><code>ILE</code></font></td>
    <td>Isoleucine</td></tr>
<tr><td ALIGN=RIGHT>23</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#336633"><code>LEU</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#336633"><code>LEU</code></font></td>
    <td>Leucine</td></tr>
<tr><td ALIGN=RIGHT>24</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#3333cc"><code>LYS</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#3333cc"><code>LYS</code></font></td>
    <td>Lysine</td></tr>
<tr><td ALIGN=RIGHT>25</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#cc9933"><code>MET</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#cc9933"><code>MET</code></font></td>
    <td>Methionine</td></tr>
<tr><td ALIGN=RIGHT>26</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#666633"><code>PHE</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#666633"><code>PHE</code></font></td>
    <td>Phenylalanine</td></tr>
<tr><td ALIGN=RIGHT>27</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#666666"><code>PRO</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#666666"><code>PRO</code></font></td>
    <td>Proline</td></tr>
<tr><td ALIGN=RIGHT>28</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff6633"><code>SER</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#ff6633"><code>SER</code></font></td>
    <td>Serine</td></tr>
<tr><td ALIGN=RIGHT>29</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#cc3300"><code>THR</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#cc3300"><code>THR</code></font></td>
    <td>Threonine</td></tr>
<tr><td ALIGN=RIGHT>30</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#666600"><code>TRP</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#666600"><code>TRP</code></font></td>
    <td>Tryptophan</td></tr>
<tr><td ALIGN=RIGHT>31</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#996633"><code>TYR</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#996633"><code>TYR</code></font></td>
    <td>Tyrosine</td></tr>
<tr><td ALIGN=RIGHT>32</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff99ff"><code>VAL</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#ff99ff"><code>VAL</code></font></td>
    <td>Valine</td></tr>
<tr><td ALIGN=RIGHT>33</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff00ff"><code>ASX</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#990099"><code>ASX</code></font></td>
    <td>ASP/ASN ambiguous</td></tr>
<tr><td ALIGN=RIGHT>34</td>
    <td ALIGN=RIGHT BGCOLOR="#000000"><font COLOR="#ff00ff"><code>GLX</code></font></td>
    <td ALIGN=RIGHT BGCOLOR="#ffffff"><font COLOR="#990099"><code>GLX</code></font></td>
    <td>GLU/GLN ambiguous</td></tr>
</table>

</td></tr>
</table>

<p>
<h2>Reference</h2>
<ul>
<li><a HREF="pdb-doc.html">PDB import/export</a></li>
<li><a HREF="../developer/shapely-scheme.html">The shapely color scheme</a></li>
</ul>

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